Thursday, September 17, 2009

Geo-Enriching Documents with iGeo


En stærkt forbedret udgave af http://www.mapmypage.com/ ...
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A strongly enhanced version of http://www.mapmypage.com/ ...
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nTerraCon just opened up shop with the launch of iGeo, their on-the-fly document geotagger. iGeo is “a new product that geo-enriches online text enabling website visitors to fly-into any location on a web page using Google Earth™ or Bing Maps™ . A free Community edition gives low-traffic website owners the power to add geo-context to their sites. nTerraCon’s Consumer Edition of iGeo™ allows larger customers, with greater traffic, to offer “on-the-fly” geo-tagging along with the embedding of text, images, audio, or video, text to create rich, immersive experiences for their users.”

I like it. So, let’s dive into to this bad boy…

  1. First thing you have to do is register, so get that out of the way. There is a free community version that you can use to at least test it out.
  2. After you register, get a key from the iGeo web site. This was a bit confusing since this is their V1 release, but you’ll want to login, click “My Account” (upper right) and then click “Obtain a New Key” (left nav). They key is good for the entire domain or directory within a domain. So, enter your domain and accept the TOUs – this will generate your key.
  3. Take the little bit of JavaScript (below) paste it where you want iGeo to geotag your locations and magically all location information in your web pages, documents (yes, Word and PDF files too!), files anything on the respective domain will be linked up to a Bing Map (assuming, of course, you chose a Bing Map). :)





Read more:

Rome was built in a day, with hundreds of thousands of digital photos


Rom bygget på en dag ... materialet tog lidt længere at gøre klar ...
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Rome was built in one day but preparing it took a while longer ...
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The ancient city of Rome was not built in a day. It took nearly a decade to build the Colosseum, and almost a century to construct St. Peter's Basilica. But now the city, including these landmarks, can be digitized in just a matter of hours.

A new computer algorithm developed at the University of Washington uses hundreds of thousands of tourist photos to automatically reconstruct an entire city in about a day.

The tool is the most recent in a series developed at the UW to harness the increasingly large digital photo collections available on photo-sharing Web sites. The digital Rome was built from 150,000 tourist photos tagged with the word "Rome" or "Roma" that were downloaded from the popular photo-sharing Web site, Flickr.

Computers analyzed each image and in 21 hours combined them to create a 3-D digital model. With this model a viewer can fly around Rome's landmarks, from the Trevi Fountain to the Pantheon to the inside of the Sistine Chapel.

"How to match these massive collections of images to each other was a challenge," said Sameer Agarwal, a UW acting assistant professor of computer science and engineering and lead author of a paper being presented in October at the International Conference on Computer Vision in Kyoto, Japan. Until now, he said, "even if we had all the hardware we could get our hands on and then some, a reconstruction using this many photos would take forever." [...]


Read more: http://www.physorg.com/news172241228.html

Wednesday, September 16, 2009

Maps on news websites - an overview


Kort er altid en del af nyheden ... Der er kort indeni ...
/Sik


Maps is always part of the news ... You'll always find a map inside ...
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The following is part of a chapter for a forthcoming book on online journalism. Contributions welcome.

Maps have become a familiar part of the news language online due to a number of advantages:

  • They provide an easy way to grasp a story at a glance
  • They allow users to drill down to relevant information local to them very quickly
  • Maps can be created very easily, and added to relatively easily by non-journalists
  • Maps draw on structured data, making them a very useful way to present data such as schools tables, crime statistics or petrol prices
  • They can be automated, updating in response to real-time information

News organisations have used maps in a number of ways:

Mapping public data

In the US there has been a rich history of mapping crime statistics online, stimulated enormously by Adrian Holovaty’s ChicagoCrime.org, which he later developed intoEveryBlock, a website which doesn’t just map crime - but also planning and liquor applications, filming, news stories, street closures and restaurant inspections. EveryBlock pulls in information from a range of sources and displays the results based on the zip code you enter, giving you a picture of everything happening local to you.

In the UK the most significant mapping of public data has been around elections. The Telegraph election maps, for example, pull from a database to provide links to specific statistics and reports. The BBC, meanwhile, have provided maps that you could change based on your own prediction of the ’swing’ a political party might experience.

More recently, however, as there has been an increasing move towards publishing public data and increasing use of the Freedom of Information Act to obtain public data, types of data have broadened.

Working with the public

When a number of motorists started reported problems with their cars, the BBC was able to gather data from viewers and website visitors to compile a map of cases richer than any motoring organisation or transport department. That data allowed them to pinpoint the particular petrol stations where contaminated fuel was being supplied. During floods in Berkshire BBC Radio Berkshire also used maps to show the worst affected areas, and what people were saying, along with data about emergency services.

On a regional level the Manchester Evening News plots information about congestion and roadworks on its travel map; and the Hartlepool Mail has used its readers’ contributions to map pot holes and derelict areas of the town. On the less serious side, newspapers have used maps for sightings of an unusual bird, to identify where readers are living around the globe, and to map sightings of unidentified flying objects.

Increasingly news organisations are providing raw data to users for them to create their own maps. The Guardian, for example, provided travel expenses data for MPs for users to analyse. Tony Hirst, publisher of the blog OUseful, visualised that data on a map in a way that made it easy to tell at a glance which MPs were claiming more for travel than other MPs who lived nearby. The newspaper has aDatablog which regularly releases data for users to visualise in different ways (The Times also have one, called Times Labs Blog, which at the time of writing did not release data; the New York Times does release data in its Visualization Lab).

Maps and mashups

Maps work particularly well when combined with another service that includes geospatial data - for instance, latitude and longitude, or a postcode or placename. During the US election a number of these ‘mashups’ appeared showing, for example, Twitter tweets or YouTube videos about the election displayed on a map. During the Beijing Olympics BBC Sport used similar technology to display tweets, blog posts and photos on a map of the Olympic village.

Image maps

In addition to traditional cartographic maps, it is possible to use images of anything as a ‘map’ that you navigate in the same way with your mouse, clicking on particular areas to bring up relevant detail. Examples have included the route of a race or river, a building’s floorplan, a timeline, line or bar chart, or even a group photo. In one excellent example, NPR took a picture of health lobbyists attending the hearing of a new health bill. Users could click on individual people to find out more about them - and were also invited to identify others in the picture. Similarly, The Guardian’s Interactives section often includes diagrams where you can roll over different areas to find out information about different aspects of the process or story.

A few years ago you needed to have skills in Flash or Dreamweaver to create an image map. However, a number of web-based tools (e.g. Vuvox and FineTuna) have since been launched that allow you to create these more easily.

Geotagging and the semantic web

Both the rise in mapping and a rise in people accessing news on mobile phones has created a demand for ‘geotagged’ (or geocoded) news. Geotagging a news article means adding geographical information to it - usually, latitude and longitude - in a way that makes it easy for search engines and news distribution platforms to understand what area that news article refers to.

In practice this means that if you are on a mobile phone with GPS technology you can search for ‘restaurant reviews near me’ or ‘crime stories near me’. Likewise, if you were looking for a new house you could easily find stories about the local schools, or plans for new buildings. Many search engines take into account the searcher’s own location when bringing up search results - so including geotagging in news stories would also increase the likelihood of your content being found by a local searcher.

Most news organisations are exploring geotagging in some capacity - in many cases, changing their content management systems so that journalists can add such information when publishing a story. Some have used this information to launch ‘hyperlocal’ parts of their news websites that allow users to read stories specifically about a particular postcode.

At the same time, organisations like Reuters have developed technologies that add geolocation data to stories after they have been written - using semantic web technology to look for place names in the article text and disambiguate them, understanding that the ‘Birmingham’ referred to is the UK’s second city and not the place of the same name in Alabama, US.

The weakness of the latter approach is that it can only work on the information contained in the article, which may not be specific enough. Meanwhile, journalists geotagging their own articles need to be aware of the privacy and legal implications in, for example, identifying the specific house that a criminal lives in. Normally postcodes in the UK are vague enough for this not to happen - while licensing arrangements mean that Google Maps’ mapping of UK postcodes varies in accuracy.

How to involve users in mapping

There are 3 broad approaches to mapping contributions from users. The first is to process every contribution manually - taking emails, phonecalls, comments and texts and entering them into the map yourself. This has clear advantages in being able to verify the information and keep the map working properly, but obvious disadvantages in the amount of time it requires for a journalist and how long it takes for the map to be updated.

A second approach is to publish the map in editable format - that is, allow anyone to edit the map directly. This obviously has the advantage of not requiring any further work from the journalist other than checking the map regularly and correcting any mistakes. However, it does require a certain level of technical competence from users, and if you’re editing a Google Map, which doesn’t yet have any granularity of control, you will find users accidentally editing each others’ entries and the title of the map itself.

The third approach is to part-automate the process in a way that addresses the weaknesses above. You can, for example, set up a Google Map so that it displays data from a Google spreadsheet. Publishing that spreadsheet and allowing users to edit it will likely result in more contributions, fewer errors, and easier correction (if anyone vandalises the spreadsheet you can easily ‘revert’ to previous versions). You can also create a Google Form for that spreadsheet, which you can publish on a website for users to fill in by answering a few questions. This makes it even easier for users to enter information and prevents them editing others’ - although it may mean duplicate entries from different people entering the same information.


Read more: http://onlinejournalismblog.com/2009/09/01/maps-on-news-websites-an-overview/

Site Suitability for Microsoft Surface


Redlines erobrer verden ...
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When redlines conquer the world ...
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This video demonstrates a land planning exercise using site suitability maps on a Microsoft Surface device. The mapping application was created using the ArcGIS API for WPF from ESRI.



Read more: http://www.youtube.com/watch?v=VZpVTUXa4lA

Geographic design or “geodesign”


Geo dit og geo dat ... Geo-design ... Ideen om hvorledes geo kommer ud over data, kartografi og applikation ... Hvorledes geo bliver en del af måden man sammensætter og anvender ting ...
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Take a phenomena and add the prefix 'geo' and you get a whole new concept ... Geo-design say ... The idea of getting beyond data, cartography and applications ... How geo is the method of building and using current technologies ...
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During the 2009 ESRI International User Conference, Jack Dangermond introduced his vision of geographic design or “geodesign”



Read more: http://gisandscience.com/2009/09/14/geodesign-demonstration-site-suitability-for-microsoft-surface/

Using the power of open source software to rededine the horizons of your world


Jolly Java Jumper ...
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Jump!
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'What is OpenJUMP?

OpenJUMP is an open source desktop GIS program written in the Java programming language. Being an open source program means that you have the freedom to modify and redistribute the program. Being written in the Java programming language means OpenJUMP is cross-platform and can run on different operating systems. (OpenJUMP will run on Linux or other operating systems in which the Java programming language is supported, not just on Microsoft Windows.) OpenJUMP is written in the Java programming language, which is powerful, productive and widely adopted. OpenJUMP is not designed as a web application, but to run on your desktop or laptop computer, like your word processor or digital music player. It is a “GIS program”, which means it is made to work with digital maps and other types of “geospatial data”. [...]


Read more: http://redefinedhorizons.com/projects_my_openjump.html

Monday, September 14, 2009

Great and Desperate Cures for Addiction


《Chinese Journal of Drug Dependence》1999-04

Does anyone know what aerosol bioelectricity is?? And why it might be used to treat heroin addiction? The entire literature seems to be in Chinese. I came across that particular paper while searching for others, specifically reports on ablative psychosurgery1 for the treatment of opiate addiction in China (Gao et al., 2003 is the first in English). Hence, the title of the present post is a reference to the book by Elliot Valenstein, Great and Desperate Cures: The Rise and Decline of Psychosurgery and Other Radical Treatments for Mental Illness.

Are there other "unusual" Chinese treatments for addiction, beyond what might be expected (e.g., acupuncture and traditional medicine)? Tetrodotoxin (TTX), a neurotoxin found in puffer fish, is a worthy runner up to aerosol bioelectricity. TTX inhibits action potentials by blocking voltage-dependent sodium channels. It has been tested as a treatment for severe cancer pain, which motivated Shi and colleagues (2009) to compare low dose TTX to placebo in abstinent addicts. After watching a heroin-related video, the group receiving TTX reported lower levels of craving and anxiety, without alterations in heart rate or blood pressure. However, these acute results were from a single session with no long-term follow up.

Although Chinese treatments for internet addiction are getting all the headlines these days, drug addiction is actually a much more serious problem. In their review of the literature, Tang et al. (2006) inform us that:
Historically, China has had extraordinarily high rates of opiate dependence. These rates declined drastically following the 1949 revolution; however, opiate abuse has re-emerged in the late 1980's and has spread quickly since then. ... The number of registered addicts in 2004 was 1.14 million (more than 75% of them heroin addicts), but the actual number is probably far higher. Opiate abuse contributes substantially to the spread of HIV/AIDS in China, with intravenous drug use the most prevalent route of transmission (51.2%). Currently, the main treatments for opiate dependence in China include short-term detoxification with opiate agonists or non-opiate agents, such as clonidine or lofexidine [alpha-2 adrenergic drugs that inhibit norepinephrine release]; Chinese herbal medicine and traditional non-medication treatments are also used. Methadone maintenance treatment (MMT) has not been officially approved by the Chinese government for widespread implementation, but some pilot studies are currently underway.
Which brings us back to neurosurgery. But before discussing the results of Gao et al., a quick review. In the last post, we learned about a new and less desperate cure, the application of Deep Brain Stimulation for Severe Alcoholism. The target region in this small clinical trial (n=3) was the nucleus accumbens (NAcc), which has been called a "pleasure center" and "hedonic hot spot" that responds to food and pharmaceutical and financial and sexual rewards. The idea behind NAcc DBS was to reduce alcohol craving and "incentive sensitization" in severely impaired patients who had failed multiple treatments (Heinze et al., 2009). The researchers drew upon the experimental and theoretical work of Berridge and colleagues (2009) distinguishing between the "wanting" (incentive salience) and "liking" (hedonic impact) aspects of reward:
Usually a brain ‘likes’ the rewards that it ‘wants’. But sometimes it may just ‘want’ them. Research has established that ‘liking’ and ‘wanting’ rewards are dissociable both psychologically and neurobiologically. By ‘wanting’, we mean incentive salience, a type of incentive motivation that promotes approach toward and consumption of rewards, and which has distinct psychological and neurobiological features.
"Liking" has been strongly linked to endogenous opioid systems in the NAcc and ventral pallidum [part of the globus pallidus] as shown below.2


From Fig. 1 (Berridge et al., 2009). Forebrain hedonic hotspots in nucleus accumbens shell and in ventral pallidum where mu opioid agonist microinjections cause amplification of ‘liking’ reactions to sweetness. Red/yellow indicates greatest amplification of ‘liking’ for the sensory pleasure.

In contrast, "wanting" has been most strongly associated with dopamine in the NAcc, but in reality...
...brain substrates for ‘wanting’ are more widely distributed and more easily activated than substrates for ‘liking’. Neurochemical ‘wanting’ mechanisms are more numerous and diverse in both neurochemical and neuroanatomical domains... In addition to opioid systems, dopamine and dopamine interactions with corticolimbic glutamate and other neurochemical systems activate incentive salience ‘wanting’. Pharmacological manipulations of some of those systems can readily alter ‘wanting’ without changing ‘liking’. For example, suppression of endogenous dopamine neurotransmission reduces ‘wanting’ but not ‘liking’.
Addiction is conceived as a process by which drugs of abuse produce neural sensitization and compulsive "wanting" even in the absence of "liking". With this literature in mind, Gao et al. (2003) wished to:
...explore a new way of treating drug addiction by ablating the NAcc... using stereotactic surgery, blocking the mesocorticolimbic dopamine circuit, alleviating craving for drugs and lowering the relapse rate after detoxification. On the basis of animal experiments, stereotactic surgery was performed in 28 patients by making a lesion in the NAcc bilaterally to treat opiate drug dependence.
I'm not so sure the surgeons were able to isolate the "wanting" from the "liking" regions of the NAcc, since they seem to be anatomically adjacent as shown below.


Fig. 2 (Berridge et al., 2009). Expansion of mu opioid hotspot in nucleus accumbens with delineation of ‘liking’ versus ‘wanting’ zones. Green: the entire medial shell mediates opioid-stimulated increases in ‘wanting’ for food reward. Orange-red: circumscribed cubic-millimeter sized hedonic hotspot generates increases in ‘liking’ after the same opioid stimulation. Blue: a small hedonic ‘coldspot’ suppresses ‘liking’ reactions to sucrose, whereas a larger purple zone suppresses ‘disliking’ reactions to quinine.

Were the surgeries successful? Not so much:
The mean follow-up period was 15 months. Relapse has not occurred in 11 cases up till now. Drug-free time in these patients has been more than half a year in 4 cases (more than a year in 3 cases), and less than half a year in 7 cases. Relapse occurred in 15 cases after surgery. Drug-free time in these patients was more than half a year in 3 cases, between 1 month and half a year in 10 cases and less than 1 month in 2 cases.
Plus there were side effects in some patients: personality changes were seen in 2 and temporary memory loss in 4. Last but not least was the issue of informed consent, which wasn't discussed at all in the paper. Alarmingly, the psychological state of the patients before surgery seems to suggest they lacked capacity to give informed consent:
Analysis of the results showed that the patients’ psychohygienic situation was poor prior to the operation and their personalities were characterized by unstable emotion, being seriously distressed by tonicity and prone to following their own course, running risks and doing everything without considering the consequences, paranoid state, low intelligence level, mental aberration and weak-willedness.
In comparison, the careful screening procedures of Heinze et al. (2009) and the reversible nature of their intervention are vastly superior. Comments on my previous post have ranged from unbridled enthusiasm for DBS 3 (also see Best Before Yesterday) to skepticism ("We still have no idea whether this will this actually work"), with caution and curiosity in between. I suspect the antipsychiatry trolls [the comment is priceless] might come out of the woodwork for this one. In this case, I would agree that criticism is warranted.

Footnotes

1 Wikipedia warns us that "The medical procedure of psychosurgery should not be confused with psychic surgery — surgery purportedly performed by paranormal means."

2 "Liking" has also been associated with endocannabinoid and GABAA-benzodiazepine systems in the brain.

3 For more information on DBS for intractable depression, see The Neurocritic's archival posts:
The Sad Cingulate

Sad Cingulate on 60 Minutes and in Rats

NAcc Localization for DBS
...and two articles by science writer David Dobbs:
A Wiring Diagram in the Brain for Depression

A Depression Switch?

References

Berridge KC, Robinson TE, Aldridge JW. (2009). Dissecting components of reward: 'liking', 'wanting', and learning. Curr Opin Pharmacol. 9:65-73.

ResearchBlogging.org

Gao, G., Wang, X., He, S., Li, W., Wang, Q., Liang, Q., Zhao, Y., Hou, F., Chen, L., & Li, A. (2003). Clinical Study for Alleviating Opiate Drug Psychological Dependence by a Method of Ablating the Nucleus accumbens with Stereotactic Surgery. Stereotactic and Functional Neurosurgery, 81 (1-4), 96-104 DOI: 10.1159/000075111

Heinze, H. et al. (2009). Counteracting incentive sensitization in severe alcohol dependence using deep brain stimulation of the nucleus accumbens: clinical and basic science aspects. Frontiers in Human Neuroscience, 3.

Shi J, Liu TT, Wang X, Epstein DH, Zhao LY, Zhang XL, Lu L. (2009). Tetrodotoxin reduces cue-induced drug craving and anxiety in abstinent heroin addicts. Pharmacol Biochem Behav. 92:603-7.

Tang YL, Zhao D, Zhao C, Cubells JF. (2006). Opiate addiction in China: current situation and treatments. Addiction 101:657-65.